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I have a problem to compile the mex files directly from the source, as it is recommended in the downloads section for MacOS users. I used RFMexStandalone-v0.02.zip, Matlab R2014a and MacOS 10.9.4. To do so I installed the latest version of gcc, 4.9.1 via macports, which is said to include gfortran. When run 'make diabetes' in a terminal in the RFRegC I get an output like this echo -e 'Compiling diabetes test case' -e Compiling diabetes test case g src/cokus.cpp src/regRF.cpp src/diabetesCwrapper.cpp -g -fPIC -pg -O2 -lm -o diabetestest and a subsequent test './diabetestest' suggests that everything works fine. When I set the compiler for Matlab R2014a by 'mex -setup', I am told that I use a 'MEX configured to use 'Xcode with Clang' for C language compilation.'
(which is probably what I used the last time I compiled anything via Matlab) and can choose a different language by 'mex -setup FORTRAN'. This gives me a positive output (at least when Matlab is opened from a terminal that 'knows' the path to gcc, see here: ompiler-mac-os), but also a warning: MEX configured to use 'gfortran' for FORTRAN language compilation. Warning: The MATLAB C and Fortran API has changed to support MATLAB variables with more than 2^32-1 elements. In the near future you will be required to update your code to utilize the new API. You can find more information about this at: Sadly, whenever I run any script now, that contains a command with 'mex. , I get the error Error using mex Unknown MEX argument '-o'.
Also sadly, the recommended 'compilersettings.txt' in the 'MacOSprecompiled-WITHOUTSOURCE-v0.02.tar'-download are of no help to me, since they rely on a 'mexopts.sh'-file, which does not exist anymore for this version of Matlab. Ac-osx-10-9-and-matlab-r2014a For the same reason, I could not apply anything I found so far in the issues section. Any help would be greatly appreciated! Best regards, Rosmarie Original issue reported on code.google.com by rosmarie.@gmail.com on 25 Aug 2014 at 3:49.
Hello what happens if you write mex on matlab's command prompt? And i am guessing you're running mex via the command prompt (on running makefile). What is the output if you run mex on command prompt then? I am guessing you might not have matlab's mex in the command prompt but some other mex command and that's why -o is not being accepted what you can instead do is navigate to RFRegC and run the following two commands (do both steps within matlab's command prompt) mex mexregressionRFtrain.cpp regRF.cpp cokus.cpp -o mexRFtrain -DMATLAB mex mexregressionRFpredict.cpp regRF.cpp cokus.cpp -o mexRFpredict -DMATLAB btw are you using RFClassC you'll have to run a different set of commands (lines 22 and 23 in pilelinux.m#22) Original comment by abhirana on 26 Aug 2014 at 4:49. Hello abhirana, thanks for your comments.
On typing 'mex', I get Error using mex Not enough input arguments. And on 'help mex': Contents of mex: virtualinport - describes the virtual input port block Contents of mex: rtwmakecfg - Add include and source directories to make files.
Mex is both a directory and a function. Mex Compile mex-function Usage: mex options. file files. Description.
Command Line Options Available on All Platforms.O Optimize the object code. Optimization is enabled by default and by including this option on the command line. If the -g option appears without the -O option, optimization is disabled. For more information, see (full output in file attached) The command documentation matches with the documentation on the original matlab support page, but there is really no option -o, only one option -O for optimization. Which is, why both the commands you posted, when executed in the ' /Users/Marie/Documents/MATLAB' (where the files listed lay) give the same error. Did Matlab maybe change the syntax for the mex command? When I run cc = mex.getCompilerConfigurations i get a 3x1 struct, of which the third entry obviously describes the gfortran compiler.
Original comment by rosmarie.@gmail.com on 26 Aug 2014 at 8:01 Attachments:. Somehow, after all, I wasn't quite sure if I had my compilers and settings in Matlab all right.
So I started right over again. These were the steps I took, and at least I got a working compiler setup, which is at least something: 1) Re-installed Xcode from App-Store 2) Installed latest version of CommandLineTools (OS X 10.9) for Xcode - Late August 2014 from official Developers Website: 3) Download the latest precompiled GNU compilers. Xcode includes the GNU C and C compilers, but the versions are sometimes a bit dated. Followed procedure described here: +X#InstallingtheGNUcompilersonMacOSX-InstructionsforMacOS10.9(Mavericks)withXcode5 Copied the file from to my home folder, then used sudo tar xvf gcc-4.9-bin.tar -C / to unpack its content to my root directory. Then, since my terminal type (echo $SHELL) was /bin/bash, used echo 'export PATH=/usr/local/bin:$PATH' /.bashprofile to ensure the newly installed compilers are used by default. This worked fine, as this output suggests: me: Marie$ gcc -v Configured with: -prefix=/Applications/Xcode.app/Contents/Developer/usr -with-gxx- include-dir=/usr/include/c/4.2.1 Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn) Target: x8664-apple-darwin13.3.0 Thread model: posix me: Marie$ gfortran -v Es werden eingebaute Spezifikationen verwendet.
COLLECTGCC=gfortran COLLECTLTOWRAPPER=/usr/local/libexec/gcc/x8664-apple-darwin13.1.0/4.9.0/lto-wrapper Ziel: x8664-apple-darwin13.1.0 Konfiguriert mit:./gcc-4.9.0/configure -enable-languages=fortran Thread-Modell: posix gcc-Version 4.9.0 (GCC) 4) Since, back in MATLAB, I got this error mex -setup FORTRAN Error using mex No supported compiler or SDK was found. Hey, thats awesome! It just works! I did the same change that you suggested to every command of the same structure in the mexregressionRFpredict.cpp, mexClassificationRFpredict.cpp and mexClassificationRFtrain.cpp, and they all compiled nicely. Well, nicely - saying with a warning: In file included from regRF.cpp:65:./qsort.c:80:42: warning: for loop has empty body -Wempty-body l-;for(;vlvt;l-); ^./qsort.c:80:42: note: put the semicolon on a separate line to silence this warning 1 warning generated. I will attach all the files that I finally used below, so anyone who has a similar problem may just follow the steps above and use the files. Thank you very much, abhirana!
Original comment by rosmarie.@gmail.com on 27 Aug 2014 at 8:41 Attachments:. Hi Abhi and Rosmarie, It is awesome. I followed the every single step and finally solved my problem with the compiling. By the way I still receive this message: MEX configured to use 'Xcode with Clang' for C language compilation. Warning: The MATLAB C and Fortran API has changed to support MATLAB variables with more than 2^32-1 elements. In the near future you will be required to update your code to utilize the new API. You can find more information about this at: api.html.
To choose a different language, select one from the following: mex -setup C mex -setup FORTRAN and when I choose FORTRAN it gives me an error that: Error using mex No supported compiler or SDK was found. For options, visit but the compiler works seamlessly.
Do you have any idea that where is the problem? Regards, Vadoud Original comment by vad.@gmail.com on 6 Nov 2014 at 6:41.
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